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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaaacactttcattagtaaactgaatttgaaggatgaattttttttttgatatatgaatgttgatgaatcagATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAG

Basic information

species Arabidopsis thaliana
transcript AT5G48230.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435447|gb|EG478039.1|EG478039
EST:     ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG                         ATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT
genomic: ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAGgtaacaaaac ... gatgaatcagATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT
EST: gi|116435458|gb|EG478050.1|EG478050
EST:     ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG                         ATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT
genomic: ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAGgtaacaaaac ... gatgaatcagATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT
EST: gi|116466365|gb|EG508957.1|EG508957
EST:     ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG                         ATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT
genomic: ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAGgtaacaaaac ... gatgaatcagATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT
EST: gi|116435448|gb|EG478040.1|EG478040
EST:     ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG                         ATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT
genomic: ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAGgtaacaaaac ... gatgaatcagATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT
EST: gi|116435459|gb|EG478051.1|EG478051
EST:     ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAG                         ATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT
genomic: ATTAGCAATGGCCCATACATCAGAATCTGTGAATCCTAGAGgtaacaaaac ... gatgaatcagATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactgaatttgaaggatgaattttttttttgatatatgaatgttgatgaatcagATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTCTCGGATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAG
                                         tgttgat  putative branch site (score: 4)
                atgaattttttttttg  TA-rich tract