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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgttttctgttttcttttatgaaatctgatttgtattacatttgatgcgatgaaatgaatctgattctgtattgtttgtgtgatttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT

Basic information

species Arabidopsis thaliana
transcript AT5G47930.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|222358183|gb|GH717943.1|GH717943
EST:     GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATG                         GATGTTAAGTGTCAGGGATGCTTCAACAT
genomic: GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT
EST: gi|47831821|gb|CK121505.1|CK121505
EST:     GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATG                         GATGTTAAGTGTCAGGGATGCTTCAACAT
genomic: GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT
EST: gi|124905441|gb|EH979521.1|EH979521
EST:     CAATCTCCCAACTCCTTCTTCATG                         GATGTTAAGTGTCAGGGATGCTTCAACAT
genomic: CAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT
EST: gi|164158903|gb|ES102498.1|ES102498
EST:     GCGTCTCGTGCAATCTCCCAACTCCTTCTTCATG                         GATGTTAAGTGTCAGGGATGCTTCAACAT
genomic: GCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT
EST: gi|164198700|gb|EL979616.1|EL979616
EST:     GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATG                         GATGTTAAGTGTCAGGGATGCTTCAACATAACCAC
genomic: GAAAGCATAAGCTCAAGCGTCTCGTGCAATCTCCCAACTCCTTCTTCATGgtactgtttt ... tttttttcagGATGTTAAGTGTCAGGGATGCTTCAACATAACCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttgatgcgatgaaatgaatctgattctgtattgtttgtgtgatttttttcagGATGTTAAGTGTCAGGGATGCTTCAACAT
                    atctgat  putative branch site (score: 4)
                                             tttttttc  putative PPT
                                          tgattttttt  TA-rich tract