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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacacgtcaaatactccatacttatagatggcttatatgactatagttcttctttgaaattggaacatgattgttcgtatggtatctttgttttctgcagGGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCTAAATCTGTTCCCTGCACTCAAAAACTAGTTGGTCCTTCTTCCATATCCT

Basic information

species Arabidopsis thaliana
transcript AT5G45430.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86070349|gb|DR366106.1|DR366106
EST:     CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAG                         GGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT
genomic: CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAGgtatgggttt ... ttttctgcagGGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT
EST: gi|86070347|gb|DR366104.1|DR366104
EST:     CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAG                         GGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT
genomic: CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAGgtatgggttt ... ttttctgcagGGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT
EST: gi|116444405|gb|EG486997.1|EG486997
EST:     CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAG                         GGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT
genomic: CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAGgtatgggttt ... ttttctgcagGGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT
EST: gi|116444417|gb|EG487009.1|EG487009
EST:     CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAG                         GGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT
genomic: CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAGgtatgggttt ... ttttctgcagGGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT
EST: gi|86070348|gb|DR366105.1|DR366105
EST:     CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAG                         GGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT
genomic: CAGACCTTCTGCGATCTTTACGGAAGGTGTGATGCAAATTTCTGATTCAGgtatgggttt ... ttttctgcagGGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcttctttgaaattggaacatgattgttcgtatggtatctttgttttctgcagGGCTGATGTTTGCAAGTTATCCTACCTTCACACAGTCCTAGAGTGTCATCTAAATCTGTTCCCTGCACTCAAAAACTAGTTGGTCCTTCTTCCATATCCT
                                     tatctttgttttct  CT-rich tract
       tttgaaatt  TA-rich tract