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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaaatcttgagttattgataattgtagaaataatcttgagttcttgatcttgatttttttgtgttatggtttttctttttttaagGCTGAGAAGCTTTCAATGAGAAAAGAAGTAGCAAACATAGTGTTGGATTACTCTGTTAGGACAGCAACAACTTATACTCCACAGTTTATGGGTTTACCAC

Basic information

species Arabidopsis thaliana
transcript AT5G44530.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44530.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G052365_T01 (Zea mays), 3'ss of exon 1
--------gtaaaaatcttgagttattgataattg--tagaa-ataatcttgagttcttgatct-tgatttttttgtgttatggtttttctttttttaagGCTGAGAAGCTTTCAATGAGAAAAGAAGTAGCAAACATAGTGTTGGATTACTCTGTTAGGACAGCAACAACTTATACTCCACAGTTTATGGGTTTACCAC
         |     | ||| |  |||   | ||   ||||| || || | || || |  | || | |||    |   || |  | |   | |    ||||| || ||||| ||   ||||||||||||||| ||  |  || |||||||||| |||||||||||||||||| |||| ||  | ||| | ||  | ||||
aaatcttaattcttgttttgtggaattaccagttcattagaagattatttggatttatccacctcttattgccattacttgttttctgcttgtacgaaagGCAGACAAGCTATCCGGGAGAAAAGAAGTAGCGAATGTGATGCTGGATTACTCAGTTAGGACAGCAACAACTCATACCCCTGAATTTCTTGGACTGCCAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatcttgagttcttgatcttgatttttttgtgttatggtttttctttttttaagGCTGAGAAGCTTTCAATGAGAAAAGAAGTAGCAAACATAGTGTTGGATTACTCTGTTAGGACAGCAACAACTTATACTCCACAGTTTATGGGTTTACCAC
                 tcttgat  putative branch site (score: 4)
                                    tggtttttcttttttt  putative PPT
                                 ttatggtttttctttt  TA-rich tract