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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattgtttattgccttttcctttgtctctcattcgtaaggttgaaggttggaaatttgtgacagagatgacttactttaagtaaacttatcaatcacagGATATTGGTTGCTTGCTTGACAGTTTTTGAGAGAGTTGGTGATGCGTTTGTTTCATG

Basic information

species Arabidopsis thaliana
transcript AT5G42560.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124780058|gb|EH870001.1|EH870001
EST:     GAAAAGAATAGGCCTGAAATCGAGCAACTTCGCTTTTGGTGTCAGTACTG                         GATATTGGTTGCTTGCTTGA
genomic: GAAAAGAATAGGCCTGAAATCGAGCAACTTCGCTTTTGGTGTCAGTACTGgtatattgtt ... tcaatcacagGATATTGGTTGCTTGCTTGA
EST: gi|124812469|gb|EH897335.1|EH897335
EST:     CGCTTTTGGTGTCAGTACTG                         GATATTGGTTGCTTGCTTGACAGTTTTTGAGAGAGTTGGTGATAGCGTTTG
genomic: CGCTTTTGGTGTCAGTACTGgtatattgtt ... tcaatcacagGATATTGGTTGCTTGCTTGACAGTTTTTGAGAGAGTTGGTGAT-GCGTTTG
EST: gi|116466771|gb|EG509363.1|EG509363
EST:     GAAAAGAATAGGCCTGAAATCGAGCAACTTCGCTTTTGGTGTCAGTACTG                         GATATTGGTTGCTTGCTTGACAGTTTTTGAGAGAGTTGGTGATGCGTTTGT
genomic: GAAAAGAATAGGCCTGAAATCGAGCAACTTCGCTTTTGGTGTCAGTACTGgtatattgtt ... tcaatcacagGATATTGGTTGCTTGCTTGACAGTTTTTGAGAGAGTTGGTGATGCGTTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aggttggaaatttgtgacagagatgacttactttaagtaaacttatcaatcacagGATATTGGTTGCTTGCTTGACAGTTTTTGAGAGAGTTGGTGATGCGTTTGTTTCATG
                        gacttac  putative branch site (score: 2)
                               tttaagtaaacttat  TA-rich tract