1 5' 3' | 2 5' 3' | 3 5' 3' |
...ttattagactaatcagagttagaagagttgagaaatgtagaatactagaatccttctttggtttgtggtgttttttttgcttatgttttagtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCC
species | Arabidopsis thaliana |
transcript | AT5G41700.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTAEST: gi|125039096|gb|EL111365.1|EL111365
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTA
EST: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTAEST: gi|125321542|gb|EL335627.1|EL335627
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTA
EST: TCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGEST: gi|86027897|gb|DR323650.1|DR323650
genomic: TCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGEST: gi|86027888|gb|DR323641.1|DR323641
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTACAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGEST: gi|125041918|gb|EL114187.1|EL114187
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: CTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGEST: gi|86027910|gb|DR323663.1|DR323663
genomic: CTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGEST: gi|124954543|gb|EL029628.1|EL029628
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: TCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGEST: gi|124925884|gb|EL003809.1|EL003809
genomic: TCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAG
EST: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGEST: gi|125280106|gb|EL294191.1|EL294191
genomic: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATG
EST: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTAGCAGTGCAG GTCCTGTTGCTGEST: gi|86027892|gb|DR323645.1|DR323645
genomic: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCT-GCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTG
EST: GAAGTAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCA- GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGEST: gi|86027906|gb|DR323659.1|DR323659
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGEST: gi|86027893|gb|DR323646.1|DR323646
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
tagaatccttctttggtttgtggtgttttttttgcttatgttttagtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCC
tttttgc CT-rich tract
ttatgttttagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttattagactaatcagagttagaagagttgagaaatgtagaatactagaatccttctttggtttgtggtgttttttttgcttatgttttagtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCC
- - -agactaa
- - - - - - - - - -tagaaga
- - - - - - - - - - - - - - - - - - - - - -actagaa