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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttattagactaatcagagttagaagagttgagaaatgtagaatactagaatccttctttggtttgtggtgttttttttgcttatgttttagtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCC

Basic information

species Arabidopsis thaliana
transcript AT5G41700.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86027901|gb|DR323654.1|DR323654
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027892|gb|DR323645.1|DR323645
EST:     GAAGTAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCA-                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027888|gb|DR323641.1|DR323641
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTACAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027897|gb|DR323650.1|DR323650
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027908|gb|DR323661.1|DR323661
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027890|gb|DR323643.1|DR323643
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|124774097|gb|EH864226.1|EH864226
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTA
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTA
EST: gi|125039096|gb|EL111365.1|EL111365
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTA
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTA
EST: gi|125321542|gb|EL335627.1|EL335627
EST:     TCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: TCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027904|gb|DR323657.1|DR323657
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGNAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027906|gb|DR323659.1|DR323659
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027896|gb|DR323649.1|DR323649
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         TTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|125041918|gb|EL114187.1|EL114187
EST:     CTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: CTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027910|gb|DR323663.1|DR323663
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027894|gb|DR323647.1|DR323647
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|86027907|gb|DR323660.1|DR323660
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|124954543|gb|EL029628.1|EL029628
EST:     TCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAG
genomic: TCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAG
EST: gi|86027902|gb|DR323655.1|DR323655
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
EST: gi|124925884|gb|EL003809.1|EL003809
EST:     AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         GTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATG
genomic: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATG
EST: gi|125280106|gb|EL294191.1|EL294191
EST:     AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTAGCAGTGCAG                         GTCCTGTTGCTG
genomic: AAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCT-GCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTG
EST: gi|86027893|gb|DR323646.1|DR323646
EST:     GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAG                         -TCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG
genomic: GAAGGAGCTGAAGGATCTCCAGAAAGACCCTCCAACCTCCTGCAGTGCAGgttcacttca ... gtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaatccttctttggtttgtggtgttttttttgcttatgttttagtttttgcagGTCCAGTTGCTGAAGACATGTTTCATTGGCAAGCTACAATTATGGGTCCTGCAGAGAGTCCGTATTCAGGCGGTGTGTTTCTCGTTACCATTCACTTCCC
                                              tttttgc  CT-rich tract
                                   ttatgttttagttttt  TA-rich tract