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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcttgtttgattcaatcttctttattaccttagagcctaagataagctctccattgtgcacaggtcctgtttcaatgtttaaaaaacttcgatttatcaataagtagtacaaaatgacttcaaaagaagaaggaatctactgaatactctttgtttacgatctcattatctttttgatcatagGATATTTGACATATGGTGCCTTCACTTTCCAGTCACTGATCGTACCCCTGCTCGAG

Basic information

species Arabidopsis thaliana
transcript AT5G41130.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876462|gb|AU237293.1|AU237293
EST:     ATCGATGGTACTGGATTAGGGCTCATTCGCCAGCATAAGAGGCTTGGAGA                         GATATTTGACATATGGTGCCTTCACTTTCCAGTCACTGATCGTACCCCTGC
genomic: ATCGATGGTACTGGATTAGGGCTCATTCGCCAGCATAAGAGGCTTGGAGAgtaagtcttg ... ttgatcatagGATATTTGACATATGGTGCCTTCACTTTCCAGTCACTGATCGTACCCCTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaggaatctactgaatactctttgtttacgatctcattatctttttgatcatagGATATTTGACATATGGTGCCTTCACTTTCCAGTCACTGATCGTACCCCTGCTCGAG
                                           ttttgat  putative branch site (score: 4)
                                tctcattatcttttt  CT-rich tract
                                    attatctttttgat  TA-rich tract