1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttctgcttctttgcatttatctaatctccagtacatattgctacataatttggttagagacaaacaccaaaacgttttgatttggtatgttttgtagTTCATTGGAGCTTGCAAAGAACCAATCATGGTTATAGTCACCGAGCTTTTACTCGGTGGTACATTGCGTAAATACCTTGTTAGCTTGCGTCCAGGGAGTT
species | Arabidopsis thaliana |
transcript | AT5G40540.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAAGAGAGGTCTCTATGTTGTCTAGAGTTCAACACAAAAATTTGGTCAAG TTCATTGGAGCTTGCAAAGAACCAATCATGGTTATAGTCACCGAGCTTTTA
genomic: CAAGAGAGGTCTCTATGTTGTCTAGAGTTCAACACAAAAATTTGGTCAAGgttctgcttc ... tgttttgtagTTCATTGGAGCTTGCAAAGAACCAATCATGGTTATAGTCACCGAGCTTTTA
acataatttggttagagacaaacaccaaaacgttttgatttggtatgttttgtagTTCATTGGAGCTTGCAAAGAACCAATCATGGTTATAGTCACCGAGCTTTTACTCGGTGGTACATTGCGTAAATACCTTGTTAGCTTGCGTCCAGGGAGTT
ttttgat putative branch site (score: 4)
ttttgattt TA-rich tract