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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttcttcttcactttcgtcttcgaatcttttgtttctttgtagttaaaactttatgttcgattttttttgggcagTATGCTTCGTTGTTTAGTAGAGGGGGAATGCATCCAATACCTTCAACTGTAGAGACAGCTACAGTGATGAATTCAACAACTGCACTTGATGACTCTCTGT

Basic information

species Arabidopsis thaliana
transcript AT5G38895.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124962087|gb|EL036536.1|EL036536
EST:     CTAGGAACTGTCCTTGCCTTAATTGCTTCCTCCAGAGTTTCATGGATTTG                         TATGCTTCGTTGTTTAGTAGAGGGGGAATGCATCCAATACCTTCAACTGTA
genomic: CTAGGAACTGTCCTTGCCTTAATTGCTTCCTCCAGAGTTTCATGGATTTGgtaatgttct ... ttttgggcagTATGCTTCGTTGTTTAGTAGAGGGGGAATGCATCCAATACCTTCAACTGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgaatcttttgtttctttgtagttaaaactttatgttcgattttttttgggcagTATGCTTCGTTGTTTAGTAGAGGGGGAATGCATCCAATACCTTCAACTGTAGAGACAGCTACAGTGATGAATTCAACAACTGCACTTGATGACTCTCTGT
                                         tttttttt  CT-rich tract
                    tagttaaaactttat  TA-rich tract