1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttcataatcaagattttgaatattagctgaagtgtcatcagtcttagtattagtttagccaaatttcatatcagattatttattttgctttgattatagAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCAAGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCAAACACAGCGGTT
species | Arabidopsis thaliana |
transcript | AT5G38530.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTCCTCTAATCAG AGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCAAEST: gi|116461703|gb|EG504295.1|EG504295
genomic: GGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTCCTCTAATCAGgttcttgatt ... ttgattatagAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCAA
EST: GAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTCCTCTAATCAG AGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCAA
genomic: GAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTCCTCTAATCAGgttcttgatt ... ttgattatagAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCAA
tagtattagtttagccaaatttcatatcagattatttattttgctttgattatagAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCAAGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCAAACACAGCGGTT
ctttgat putative branch site (score: 5)
ttttgcttt CT-rich tract
aaatttcatatcagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcataatcaagattttgaatattagctgaagtgtcatcagtcttagtattagtttagccaaatttcatatcagattatttattttgctttgattatagAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCAAGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCAAACACAGCGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - aatcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -agccaaa