1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtttgttgtttcttctcagcttatcccgtaccaatcgatgacgactaggtagagatttaactgtttgttttcctcttatttagGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATACAAG
species | Arabidopsis thaliana |
transcript | AT5G36890.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATATCGAAG GGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAEST: gi|86058096|gb|DR353853.1|DR353853
genomic: TGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATATCGAAGgtttgttgtt ... tcttatttagGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATA
EST: TGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATATCGAAG GGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAEST: gi|86058095|gb|DR353852.1|DR353852
genomic: TGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATATCGAAGgtttgttgtt ... tcttatttagGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATA
EST: TGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATATCGAAG GGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATA
genomic: TGAAGGTAAAAAGGGACCAAGTATATGGGATAAGTTCACTCATATCGAAGgtttgttgtt ... tcttatttagGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATA
taccaatcgatgacgactaggtagagatttaactgtttgttttcctcttatttagGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATACAAG
atttaac putative branch site (score: 3)
ctgtttgttttcctct CT-rich tract
tcttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgttgtttcttctcagcttatcccgtaccaatcgatgacgactaggtagagatttaactgtttgttttcctcttatttagGGAAGATTCTTGATGGAAGTAACGGCGATGTTGCTGTGGATCATTACCATAGATACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG