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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccctctcgtcctataagttctcacatatacaccccaacttgaaatcaaaatcttggcttcatcaagaacatatcaaagaacaatttttcttaaaaatgttagacttttttctatctttcagGAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTACCATTCTTCATAGTGATAACTCCTGCCGTCTGTATCATTTTTATCCCAAT

Basic information

species Arabidopsis thaliana
transcript AT5G36001.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116421110|gb|EG463702.1|EG463702
EST:     CATAAACAATACCATCCTCAAAGTCAAATGCTTCACATACGTTGATTCTG                         GAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTAC
genomic: CATAAACAATACCATCCTCAAAGTCAAATGCTTCACATACGTTGATTCTGgtaaccctct ... tatctttcagGAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTAC
EST: gi|116421126|gb|EG463718.1|EG463718
EST:     CATAAACAATACCATCCTCAAAGTCAAATGCTTCACATACGTTGATTCTG                         GAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTAC
genomic: CATAAACAATACCATCCTCAAAGTCAAATGCTTCACATACGTTGATTCTGgtaaccctct ... tatctttcagGAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTAC
EST: gi|116421121|gb|EG463713.1|EG463713
EST:     CATAAACAATACCATCCTCAAAGTCAAATGCTTCACATACGTTGATTCTG                         GAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTAC
genomic: CATAAACAATACCATCCTCAAAGTCAAATGCTTCACATACGTTGATTCTGgtaaccctct ... tatctttcagGAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatatcaaagaacaatttttcttaaaaatgttagacttttttctatctttcagGAAACCCTTGGTTAATAACGTTAAAGATATTATGCTTATGCCTATCCGTACCATTCTTCATAGTGATAACTCCTGCCGTCTGTATCATTTTTATCCCAAT
                                     cttttttctatctttc  CT-rich tract
               aatttttcttaaaaat  TA-rich tract