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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttttggtgattttggttaattctttgttcagcttcttactcttgttacatttttagGGTATTGCTCGTGTTCGTGGTTTGCTACTATCTGTAATCGACAATCGTTTGAAATTGTGGGAAAGCTATTCTCTTCGATTCTGTTTCGCAGTTCCTGATG

Basic information

species Arabidopsis thaliana
transcript AT5G35520.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164228595|gb|ES006538.1|ES006538
EST:     CAAAAGTCACAAGCTTTATCAAAT                         GGTATTGCTCGTGTTCGTGGTTTGCTACTATCTGTAATC
genomic: CAAAAGTCACAAGCTTTATCAAATgtgagttttg ... acatttttagGGTATTGCTCGTGTTCGTGGTTTGCTACTATCTGTAATC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggtgattttggttaattctttgttcagcttcttactcttgttacatttttagGGTATTGCTCGTGTTCGTGGTTTGCTACTATCTGTAATCGACAATCGTTTGAAATTGTGGGAAAGCTATTCTCTTCGATTCTGTTTCGCAGTTCCTGATG
                               ttcttac  putative branch site (score: 2)
                                              cattttt  putative PPT
                                        ttgttacattttta  TA-rich tract