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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctctactttgtctactcttataccttctcatttctgaacaaatcttagatatggtgaaatgacaagtttaggatcttccttttgcttttgccaaactttctgatatgaattaggccttaccatttctgtagtccttacgggttttaccttcattcagGCAATTTTTCTCTTTGGATTTGGAGTGCCATTGTTTATTGACAACAATGAAAATGGAAAAACGTTCAAATGGGGCTTATGGATCATTCATAAGCTTCTAC

Basic information

species Arabidopsis thaliana
transcript AT5G27210.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G27210.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv14s0030g00750.t01 (Vitis vinifera), 3'ss of exon 2
gtatctctactttgtctactcttataccttctcatttctgaacaaatcttagatatggtgaaatgacaagtttaggatcttccttttgcttttgccaaactttctgatatgaatt-----aggccttaccatttctgtagtccttacgggttttaccttcattcagGCAATTTTTCTCTTTGGATTTGGAGTGCCATTGTTTATTGACAACAATGAAAATGGAAAAACGTTCAAATGGGGCTTATGGATCATTCATAAGCTTCTAC
                                                                  |     ||  || |||  ||  ||  |||||  |||| ||| |  || |     |    |  ||| |  | ||     ||  | |  |   |   ||||||  ||||  || ||||||||||| || |||||||||||||||||||||||  |   | |   | | ||||||||||| ||| |  | || || ||  | |
----------------------------------------------------------------atctgtaatacaattttctgtt--ctcatgccatgctttgtgacaacaaatctagaatatttccccaatattttataatgtaatgatactgtttcttttcagGTCATTTACCTATTTGGATTTGGGGTCCCATTGTTTATTGACAACAATGATCAATCACATCGGGTGAAATGGGGCTTGTGGGTTGTCCACAAACTAGTGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatgaattaggccttaccatttctgtagtccttacgggttttaccttcattcagGCAATTTTTCTCTTTGGATTTGGAGTGCCATTGTTTATTGACAACAATGAAAATGGAAAAACGTTCAAATGGGGCTTATGGATCATTCATAAGCTTCTAC
                             tccttac  putative branch site (score: 2)
                                       ttttaccttcattc  putative PPT
     aatta  TA-rich tract