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gtaagttcactcaattgaaaagagtaattactgagttccaacttgaatgacatttgagctatttggttgcagGGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAAAGCTCGCATCTTCTCGTCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCAC
species | Arabidopsis thaliana |
transcript | AT5G27150.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCATCACCGCCTTGTTGATT GGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAAAGCTCGEST: gi|116429609|gb|EG472201.1|EG472201
genomic: ATCCATCACCGCCTTGTTGATTgtaagttcac ... ttggttgcagGGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAAAGCTCG
EST: TTTTGGAAGAGAATAGATGGATGAACGAATCCATCACCGCCTTGTTGATT GGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAAAGCTCGEST: gi|124748393|gb|EH838523.1|EH838523
genomic: TTTTGGAAGAGAATAGATGGATGAACGAATCCATCACCGCCTTGTTGATTgtaagttcac ... ttggttgcagGGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAAAGCTCG
EST: TCCATCACCGCCTTGTTGATT GGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAA-GCTCG
genomic: TCCATCACCGCCTTGTTGATTgtaagttcac ... ttggttgcagGGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAAAGCTCG
aaaagagtaattactgagttccaacttgaatgacatttgagctatttggttgcagGGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAAAGCTCGCATCTTCTCGTCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCAC
agtaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttcactcaattgaaaagagtaattactgagttccaacttgaatgacatttgagctatttggttgcagGGGCTAGGCACTGGTGTTACCATTTTGTTGATTAGTAAAGGAAAAAGCTCGCATCTTCTCGTCTTTAGTGAAGATCTTTTCTTCATATATCTTTTGCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA