1 5' 3' | 2 5' 3' | 3 5' 3' |
gttttgaatggttgatatatatacgaatttgtgggtttttgggggagagttttgagtgaatctggttgattttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGGAGAACATTG
species | Arabidopsis thaliana |
transcript | AT5G24314.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG GTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGGEST: gi|86087301|gb|DR383060.1|DR383060
genomic: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGgttttgaatg ... attttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGG
EST: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG GTTTCTTGTGGGATTCAGAGAGATGATAATGGACSCCGTGTTTGGCGGAGGEST: gi|86062439|gb|DR358196.1|DR358196
genomic: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGgttttgaatg ... attttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGG
EST: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG GTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGGEST: gi|86062438|gb|DR358195.1|DR358195
genomic: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGgttttgaatg ... attttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGG
EST: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG GTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGGEST: gi|86062437|gb|DR358194.1|DR358194
genomic: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGgttttgaatg ... attttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGG
EST: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG GTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGGEST: gi|86062441|gb|DR358198.1|DR358198
genomic: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGgttttgaatg ... attttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGG
EST: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAG GTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGGEST: gi|86062443|gb|DR358200.1|DR358200
genomic: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGgttttgaatg ... attttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGG
EST: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCCCAG GTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGGEST: gi|86075735|gb|DR371492.1|DR371492
genomic: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGgttttgaatg ... attttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGG
EST: ATTATTGATACGAGAWGTGGGAATTTSCGATGCACATTTCAGTCTCAG GTTTCTTGTGGGATCCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGG
genomic: ATTATTGATACGAGAAGTGGGAATTTGCGATGCACATTTCAGTCTCAGgttttgaatg ... attttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGG
cgaatttgtgggtttttgggggagagttttgagtgaatctggttgattttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGGAGAACATTG
ggttgat putative branch site (score: 5)
ttttttc CT-rich tract
ttgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttgaatggttgatatatatacgaatttgtgggtttttgggggagagttttgagtgaatctggttgattttttcagGTTTCTTGTGGGATTCAGAGAGATGATAATGGACGCCGTGTTTGGCGGAGGAGAACATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA