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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagattttgttaactactggagtggttatttttgcgcaattgtctgcattgtaacacgatgatcttactgttgcagCAAGTATCCGACTTTGATCTGTTTACACTGGATGACATAGATTCTGCTTTCCAGAATGTGATCAGATTGACTTACTCTCAAAATTACCATCTTTCTG

Basic information

species Arabidopsis thaliana
transcript AT5G23880.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv16s0050g00590.t01 (Vitis vinifera), 3'ss of exon 2
------------------------gtgagattttgttaactactggagtggttatttttgcgcaattgtctgcattgtaacacgatgatcttactgttgcagCAAGTATCCGACTTTGATCTGTTTACACTGGATGACATAGATTCTGCTTTCCAGAATGTGATCAGATTGACTTACTCTCAAAATTACCATCTTTCTG
                         | |  | ||      | |||   ||  ||       |  || ||   |||    |   | |  |||  || |  |||||||| || ||||||||| ||||||| |||||||| || |||||||||||||| || |||| |||||| || |||||||||||||| ||||| | ||
tgattctcttgcatttttatgtcactaatttgttacaggtttctgctttgtgtacagacaagttat-gttgacatctctaactgctactctccct-tcacagCAAGTTTCAGACTTTGATTTGTTTACCCTGGATGATATTGATTCTGCTTTCCAAAACGTGACCAGATTAACATACTCTCAAAATTATCATCTATTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtggttatttttgcgcaattgtctgcattgtaacacgatgatcttactgttgcagCAAGTATCCGACTTTGATCTGTTTACACTGGATGACATAGATTCTGCTTTCCAGAATGTGATCAGATTGACTTACTCTCAAAATTACCATCTTTCTG
                                         tcttact  CT-rich tract
     tattttt  TA-rich tract