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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtataactctcaagtcttagcaatgttagaaagcactatccttatttctgcattgaaaggaatcatttgattggtttagctgtattcttcttctgtactttgggttgtcttagctcttttactggtgatataactctttatctcttatttgtttgacgatgcagTCGATGCTTGTTTTCTTTAATCCGGTCAAGTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAG

Basic information

species Arabidopsis thaliana
transcript AT5G23550.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G23550.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os02g35640.1 (Oryza sativa), 3'ss of exon 2
gtaagtataactctcaagtcttagcaatgttagaaagcactatccttatttctgcattgaaaggaatcatttgattggtttagctgtattcttcttctgtactttgggttgtcttagctcttttactggtgatataactctttatctcttatttgtttgacgatgcagTCGATGCTTGTTTTCTTTAATCCGGTCAAGTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAG
                                                                | || |  ||||   ||  |||| | |   || | |  | ||  |  | ||   |    | | |    | |   |  ||   | || |||| |   |  ||||||| |||||||||||||| ||||| || || || ||  | |||||||| || || |||||||||||||| || ||
---------------------------------------------------------------tattcttcagatt---ttctctgtctaccaatttt-tgttgtgtttgattttcatttccctccagccactgtgggttatttgatatt-tttgatctccattgcagTCAATGCTTGTTTTCTTCAATCCTGTGAAATTCGGGGTAACATTCACCCTTGGCAATTTGATGGCACTTGGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116474042|gb|EG516634.1|EG516634
EST:     TTTATGGCTTTGCAATTTGCTTGTCAGCAGGTTTGACCTGTACACTTTTG                         TCGATGCTTGTTTTCTTTAATCCGGTCAAGTTTGGCATCACATTCACTCTG
genomic: TTTATGGCTTTGCAATTTGCTTGTCAGCAGGTTTGACCTGTACACTTTTGgtaagtataa ... gacgatgcagTCGATGCTTGTTTTCTTTAATCCGGTCAAGTTTGGCATCACATTCACTCTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagctcttttactggtgatataactctttatctcttatttgtttgacgatgcagTCGATGCTTGTTTTCTTTAATCCGGTCAAGTTTGGCATCACATTCACTCTGGGAAATTTGATGGCACTCGGGAG
                  atataactctttat  TA-rich tract