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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaattgacttcctgagagaagttttctattgaattttgctttcctgattataaagtaaggaacaagaatggcttcagcaagtggacctttgtgtaatttgatgttaatctcattttctactacgtttggcagGGAAACGAGCTTCATAGCCGAGGAAATTTCAGCGATGCCGCAGAGAAATACTTGCGT

Basic information

species Arabidopsis thaliana
transcript AT5G21990.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124905270|gb|EH979350.1|EH979350
EST:     GCTTAAAAAACAG                         GGAAACGAACTTCATAGCCGAGGAAATTTCAGCGATGCCGCAGAGAAATAC
genomic: GCTTAAAAAACAGgtaacaattg ... cgtttggcagGGAAACGAGCTTCATAGCCGAGGAAATTTCAGCGATGCCGCAGAGAAATAC
EST: gi|124966333|gb|EL040444.1|EL040444
EST:     TGCTCAATTTACTTATCAGATCAATGCAGCTCAGATGCTTAAAAAACAG                         GGAAACGAGCTTCATAGCCGAGGAAATTTCAGCGATGCC
genomic: TGCTCAATTTACTTATCAGATCAATGCAGCTCAGATGCTTAAAAAACAGgtaacaattg ... cgtttggcagGGAAACGAGCTTCATAGCCGAGGAAATTTCAGCGATGCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagtggacctttgtgtaatttgatgttaatctcattttctactacgtttggcagGGAAACGAGCTTCATAGCCGAGGAAATTTCAGCGATGCCGCAGAGAAATACTTGCGT
                        tgttaat  putative branch site (score: 3)
                taatttgatgttaat  TA-rich tract