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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactgttcttgcttctgtgattctaaacttgaggttgtacaaattagacttctcttttatgcattcattcacaaactagttttagcagaatcttggattttgatgcttgtttgtctacattgaatagATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAATGGTTCTTGTCCTGACCGTGTTGATGGCTATGTAACGCTTAATCTGATG

Basic information

species Arabidopsis thaliana
transcript AT5G19460.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86017882|gb|DR313628.1|DR313628
EST:     TCATTCCATTTCGTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAG                         AKTTACGGAGTACTTGAGGGAGTTTCATGGATATCTTTACA
genomic: TCATTCCATTT-GTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAGgtaactgttc ... cattgaatagATTTACGGAGTACTTGAGGGAGTTTCATG-ATATCTTTACA
EST: gi|86017880|gb|DR313626.1|DR313626
EST:     TTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAG                         ATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAA
genomic: TTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAGgtaactgttc ... cattgaatagATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAA
EST: gi|125237606|gb|EL251691.1|EL251691
EST:     CGTTGGTTATATTCATAAAAG                         ATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAA
genomic: CGTTGGTTATATTCATAAAAGgtaactgttc ... cattgaatagATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAA
EST: gi|86017879|gb|DR313625.1|DR313625
EST:     TTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAG                         ATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAA
genomic: TTCATTCCATTTGTTATAGAGGAACAAATCGTTGGTTATATTCATAAAAGgtaactgttc ... cattgaatagATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaactagttttagcagaatcttggattttgatgcttgtttgtctacattgaatagATTTACGGAGTACTTGAGGGAGTTTCATGATATCTTTACATTTTCACAAAATGGTTCTTGTCCTGACCGTGTTGATGGCTATGTAACGCTTAATCTGATG
                         ttttgat  putative branch site (score: 4)
                        attttgat  TA-rich tract