1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtttttttctccttcttttgtctctttggttttaccactataaaccctatccattatgttccctgtgtgtgtggtatgtttgtgaaattgttagctatctttgtgggaattgaaatttggttgattgttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTAATGGAGAGAGTGAGTGGAGTAGAGATTGTGCCGCATTTTTCACGTATAGAA
species | Arabidopsis thaliana |
transcript | AT5G19180.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAG GATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGGTAAEST: gi|86072231|gb|DR367988.1|DR367988
genomic: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttct ... gttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTG-TAA
EST: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAG GATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTTGTAAEST: gi|86072232|gb|DR367989.1|DR367989
genomic: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttct ... gttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGT-GTAA
EST: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAG GATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGGTAAEST: gi|86072230|gb|DR367987.1|DR367987
genomic: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttct ... gttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTG-TAA
EST: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAG GATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTAAT
genomic: GATATGGACCGTATTGAGGTTACTAATCTCAATCGCCAGTTCCTGTTCAGgtttttttct ... gttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTAAT
gtgaaattgttagctatctttgtgggaattgaaatttggttgattgttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTAATGGAGAGAGTGAGTGGAGTAGAGATTGTGCCGCATTTTTCACGTATAGAA
ggttgat putative branch site (score: 5)
ttgtttt putative PPT
aattgaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttttctccttcttttgtctctttggttttaccactataaaccctatccattatgttccctgtgtgtgtggtatgtttgtgaaattgttagctatctttgtgggaattgaaatttggttgattgttgttttagGATTGAAGATGTAGGAAAGCCTAAGGCAGAGGTAGCAGCAAAGCGTGTAATGGAGAGAGTGAGTGGAGTAGAGATTGTGCCGCATTTTTCACGTATAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG