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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...catgcattattgtagagagtttaggttaggttttgtgttgagattcaattagtgagtttccatggatgtgttgtgatgagtatcgtgactttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG

Basic information

species Arabidopsis thaliana
transcript AT5G17770.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86066404|gb|DR362161.1|DR362161
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066405|gb|DR362162.1|DR362162
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|47828476|gb|CK118160.1|CK118160
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066415|gb|DR362172.1|DR362172
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066417|gb|DR362174.1|DR362174
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066418|gb|DR362175.1|DR362175
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066449|gb|DR362206.1|DR362206
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066416|gb|DR362173.1|DR362173
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066431|gb|DR362188.1|DR362188
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066447|gb|DR362204.1|DR362204
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066445|gb|DR362202.1|DR362202
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066440|gb|DR362197.1|DR362197
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066414|gb|DR362171.1|DR362171
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066432|gb|DR362189.1|DR362189
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066435|gb|DR362192.1|DR362192
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066403|gb|DR362160.1|DR362160
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|125192662|gb|EL207616.1|EL207616
EST:     TTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: TTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066411|gb|DR362168.1|DR362168
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066437|gb|DR362194.1|DR362194
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|124892830|gb|EH971732.1|EH971732
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGC-G                         GGGAAAGGATGGT
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGT
EST: gi|86066408|gb|DR362165.1|DR362165
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|125084244|gb|EL144520.1|EL144520
EST:     TGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: TGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066446|gb|DR362203.1|DR362203
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066421|gb|DR362178.1|DR362178
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066420|gb|DR362177.1|DR362177
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066428|gb|DR362185.1|DR362185
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066423|gb|DR362180.1|DR362180
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066425|gb|DR362182.1|DR362182
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGTATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066434|gb|DR362191.1|DR362191
EST:     ACTTCTACTACTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066412|gb|DR362169.1|DR362169
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066436|gb|DR362193.1|DR362193
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGTATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066442|gb|DR362199.1|DR362199
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066407|gb|DR362164.1|DR362164
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066419|gb|DR362176.1|DR362176
EST:     CTTCTACCTTCTGTGTTGGGTCTTCCCATTGGACAAAACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: CTTCTAC-TTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066448|gb|DR362205.1|DR362205
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066451|gb|DR362208.1|DR362208
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066413|gb|DR362170.1|DR362170
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066430|gb|DR362187.1|DR362187
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066422|gb|DR362179.1|DR362179
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066439|gb|DR362196.1|DR362196
EST:     ACTTCTACTTCTGTGTTGGGTCTTCC-ATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066441|gb|DR362198.1|DR362198
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066438|gb|DR362195.1|DR362195
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|124873546|gb|EH955191.1|EH955191
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTA
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTA
EST: gi|125308180|gb|EL322265.1|EL322265
EST:     CTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: CTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066444|gb|DR362201.1|DR362201
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
EST: gi|86066429|gb|DR362186.1|DR362186
EST:     ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAG                         GGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC
genomic: ACTTCTACTTCTGTGTTGGGTCTTCCCATTGGACAACACATCAGTTGCAGgtttggtcct ... ttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caattagtgagtttccatggatgtgttgtgatgagtatcgtgactttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG
                                           ctttctc  CT-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
catgcattattgtagagagtttaggttaggttttgtgttgagattcaattagtgagtttccatggatgtgttgtgatgagtatcgtgactttctcaatagGGGAAAGGATGGTCAAGGAGAGGATGTTATTAAGCCATACACCCCGACTACGTTAGACTCTGACGTTGGACGTTTCGAACTTGTCATTAAG

- - - - - - - - - - - - - - ggttttg