Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattgtactctaatgtatgttacgaaattataccatttaaacgtattggcaaattttaacatttgctagaaccacttttacatgtttttggttcatatagatcctagtacatgtgtcctcactctttaacatttataagttggtactatcttttcttccaaaaatgttatagCTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAGGAGTTCCAACGAACGTAAAACATGTATCGCACATCGGTTGGGAAAGCGG

Basic information

species Arabidopsis thaliana
transcript AT5G16490.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116442164|gb|EG484756.1|EG484756
EST:     CGGTATTAACCGGATTTTCAAGAGCTTCAAGACCATTTCTCAACTCTTTG                         CTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAG
genomic: CGGTATTAACCGGATTTTCAAGAGCTTCAAGACCATTTCTCAACTCTTTGgtaatattgt ... aatgttatagCTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAG
EST: gi|116438795|gb|EG481387.1|EG481387
EST:     CGGTATTAACCGGATTTTCAAGAGCTTCAAGACCATTTCTCAACTCTTTG                         CTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAG
genomic: CGGTATTAACCGGATTTTCAAGAGCTTCAAGACCATTTCTCAACTCTTTGgtaatattgt ... aatgttatagCTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAG
EST: gi|116410276|gb|EG452868.1|EG452868
EST:     CGGTATTAACCGGATTTTCAAGAGCTTCAAGACCATTTCTCAACTCTTTG                         CTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAG
genomic: CGGTATTAACCGGATTTTCAAGAGCTTCAAGACCATTTCTCAACTCTTTGgtaatattgt ... aatgttatagCTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcactctttaacatttataagttggtactatcttttcttccaaaaatgttatagCTGACAAAGATGAAGAGAAGGAAGAAGTCGAAACATCAGGAATGGAGATAGGAGTTCCAACGAACGTAAAACATGTATCGCACATCGGTTGGGAAAGCGG
       tttaacatttataagt  TA-rich tract