1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgttcttaattcaaatactattttagattcctatcatatcatttcaagaaagatcttttttaaaagtttgttttcgtgaaatatttcagAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAG
species | Arabidopsis thaliana |
transcript | AT5G15800.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGAACTTGAG AACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAAEST: gi|47831874|gb|CK121558.1|CK121558
genomic: CCAAAGAACTTGAGgtgttcttaa ... aatatttcagAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAA
EST: GCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAG AACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAAEST: gi|19878650|gb|AU239481.1|AU239481
genomic: GCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGgtgttcttaa ... aatatttcagAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAA
EST: GCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAG AACAGCTACAGAGAATATCTGAAGCTTAAGGGT-GATATGAGAACCTTCAAEST: gi|86073095|gb|DR368852.1|DR368852
genomic: GCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGgtgttcttaa ... aatatttcagAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAA
EST: GCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAG AACAGCTACAGAGAATATCTGA-GCTTAAGGGTAGATATGAGAACCTTCA-
genomic: GCAGCTATGGATCCATTGAAGTCAACAACAAACCTGCCAAAGAACTTGAGgtgttcttaa ... aatatttcagAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAA
catatcatttcaagaaagatcttttttaaaagtttgttttcgtgaaatatttcagAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAG
atcttttttaaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgttcttaattcaaatactattttagattcctatcatatcatttcaagaaagatcttttttaaaagtttgttttcgtgaaatatttcagAACAGCTACAGAGAATATCTGAAGCTTAAGGGTAGATATGAGAACCTTCAACGTCAACAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC