Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattccactacaaacactctctcacttgtattgttctctttcttgtggtataagtaatcatggttagggttttatcgcagATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCATCCAGGGATGACAGTTTTTAGTAAGCTTCTCTTTGGTACAATGCACATCA

Basic information

species Arabidopsis thaliana
transcript AT5G15120.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G15120.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA18G49130.1 (Glycine max), 3'ss of exon 2
----------------------------------------------------gtaaattccactacaaacac-tctctcacttgtattgttctctttc-ttgtggtataagtaatcatggttagggtttta----tcgcagATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCATCCAGGGATGACAGTTTTTAGTAAGCTTCTCTTTGGTACAATGCACATCA
                                                    ||  |||    |  |      | |   | |    || ||   | |  || || ||| | | || ||  |||   |||||    | | |||| || || || || |||||||||||||| |||||||||||||| || || || || ||||| ||||||||||||||||| ||||| || ||||||||||
gtaactaagctatgacctataaattgctttcttgcagtgctatactggtgtcgtttattttgttttattggtgtgtaagagtaactttatttcttataattttgttattatttattattattattattttatgcgttgaagATGGGAATATTTTGCTTGCCACCTTCTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTTAGTAAGCTTCTTTTTGGAACCATGCACATCA

upper sequence: AT5G15120.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA13G05230.1 (Glycine max), 3'ss of exon 2
--------------------gtaaattccac--tacaaacactctctcacttgtattgttctctttcttgtggt-ataagtaatcatggttagggttttatcgcagATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCATCCAGGGATGACAGTTTTTAGTAAGCTTCTCTTTGGTACAATGCACATCA
                        ||| |||  | ||  ||  |       || | || | | ||| ||||| | ||||       |  ||   || ||  | ||||| ||||| || ||||||||||||||||| || ||||||||||| || || || || ||||| ||||| |||||||| || ||||| || ||||||||||
gtacttactctaaccttgaaactgatttcacggtgcatgcatgcatgagactg-agtgctgtttttgttgtgattataaccttgttttattgttgtgttg-cacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATTCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTACTTTTTGGCACTATGCACATCA

upper sequence: AT5G15120.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA09G37490.2 (Glycine max), 3'ss of exon 2
----gtaaattcca--ctacaaac-actctctca-----cttgtattgttc--tctttcttgtg-gtataagtaatcatggtt---agggttttatcgc----------------agATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCATCCAGGGATGACAGTTTTTAGTAAGCTTCTCTTTGGTACAATGCACATCA
     |||  |      || |||   || ||||      || || |||||   | | | | ||| |||   ||||   |  ||   |   |||||| |                 |||| || || || || |||||||||| ||| |||||||||||||| || || || || ||||| ||||| ||||||||||| ||||| || ||||||||||
gtaattaagctatgacttataaattgctttctcgcagtgctagtgttgtttaatttgtttggtgtgtaagggtaactttatttcttataattttattgttatttttatgtgttgaagATGGGAATATTTTGCTTGCCACCTTGTGGAGTTATTCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTTCTGTTTGGAACCATGCACATCA

upper sequence: AT5G15120.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA19G02430.1 (Glycine max), 3'ss of exon 2
------------------gtaaattccactacaaacactctctcacttgtattgttctctttcttgtggtataagtaatcatggttagggttttatcgcagATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCATCCAGGGATGACAGTTTTTAGTAAGCTTCTCTTTGGTACAATGCACATCA
                   |         | ||  ||  |   ||   |  |   |    || |||||||    |||| | | |||   || ||  | ||||| ||||| || ||||||||||||||||| || || |||||||| || || || || ||||| ||||| |||||||| || ||||| || ||||||||||
gctttcactcttgaccggctttgggtgggtgcatgcatgcatgcatgagagtgagtgctgtttttgtggtgattgtaacctttgttgttgtgttg-cacagATGGGGATATTTTGTTTGCCACCTTCTGGGGTCATCCCTCTTCACAATCACCCTGGAATGACGGTTTTCAGTAAGCTACTTTTTGGCACTATGCACATCA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467253|gb|EG509845.1|EG509845
EST:     CTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCG                         ATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCAT
genomic: CTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCGgtaaattcca ... tttatcgcagATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCAT
EST: gi|116471642|gb|EG514234.1|EG514234
EST:     CTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCG                         ATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCAT
genomic: CTTCGCCACCAATAACGTATCTGCATCTACACCAGTGTGATCAATTCTCGgtaaattcca ... tttatcgcagATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtattgttctctttcttgtggtataagtaatcatggttagggttttatcgcagATTGGGATTTTCTGTTTGCCACCTTCTGGTGTTATTCCTCTTCATAACCATCCAGGGATGACAGTTTTTAGTAAGCTTCTCTTTGGTACAATGCACATCA
                                            ttttatc  CT-rich tract
                       tataagtaat  TA-rich tract