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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttttcaataccaataacattatctcccttgttactgctagccttttggtctgatttctgatttttttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT

Basic information

species Arabidopsis thaliana
transcript AT5G14040.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G14040.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv14s0068g01260.t01 (Vitis vinifera), 3'ss of exon 2
gtgagtttttcaataccaataacattatctccc----ttgttactgc-tagccttttggtctgatttctgatttt--------tttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
||  |  | ||||           ||  |||||    | |  |||   |||   |  | | | | | |||||| |        ||||||| ||||| |||||  ||| ||| |||||||||||||||||||| |
gtatgcctatcaaactttgacttctttcctccccaattcgccactttatagtactaagctataactactgattatgtgaaaactttgcagATTGTACAAGGGCATTGTTCCTCTCTGGGGACGTCAGATTCCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164094607|gb|ES101038.1|ES101038
EST:     CTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGG                         CTTGTATAAGGGTCTTGCTCCACTCGTGGGGACGTCAGATTCCTT
genomic: CTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGgtgagttttt ... ttttttgcagCTTGTATAAGGGTCTTGCTCCACTC-TGGGGACGTCAGATTCCTT
EST: gi|47831554|gb|CK121238.1|CK121238
EST:     GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGG                         CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
genomic: GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGgtgagttttt ... ttttttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
EST: gi|116450593|gb|EG493185.1|EG493185
EST:     GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGG                         CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
genomic: GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGgtgagttttt ... ttttttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
EST: gi|116407737|gb|EG450329.1|EG450329
EST:     GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGG                         CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
genomic: GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGgtgagttttt ... ttttttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
EST: gi|124821567|gb|EH906433.1|EH906433
EST:     GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGG                         CTTGTATAAGGGTCTTGACTCCACTCTGGGGACGTCAGATTCCTTACA
genomic: GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGgtgagttttt ... ttttttgcagCTTGTATAAGGGTCTTG-CTCCACTCTGGGGACGTCAGATTCCTTACA
EST: gi|124859158|gb|EH943595.1|EH943595
EST:     TGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGTAGG                         CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
genomic: TGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGG-AGGgtgagttttt ... ttttttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
EST: gi|47829559|gb|CK119243.1|CK119243
EST:     GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGG                         CTTGTATAAGGGTCTTGCTCCCACTCTGGG-ACGTCAGATTCCTT
genomic: GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGgtgagttttt ... ttttttgcagCTTGTATAAGGGTCTTGCTCC-ACTCTGGGGACGTCAGATTCCTT
EST: gi|125310039|gb|EL324124.1|EL324124
EST:     GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGG                         CTTGTATAAGGGT
genomic: GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGgtgagttttt ... ttttttgcagCTTGTATAAGGGT
EST: gi|124969172|gb|EL043093.1|EL043093
EST:     TGATGGATTTCCCAAGTTTATCAAGTCCGAAGGTATACGGAGG                         CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
genomic: TGATGGATTTCCCAAGTTTATCAAGTCCGAAGG-ATACGGAGGgtgagttttt ... ttttttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
EST: gi|47827833|gb|CK117517.1|CK117517
EST:     GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGG                         CTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
genomic: GGGATGTCTGATGGATTTCCCAAGTTTATCAAGTCCGAAGGATACGGAGGgtgagttttt ... ttttttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattatctcccttgttactgctagccttttggtctgatttctgatttttttgcagCTTGTATAAGGGTCTTGCTCCACTCTGGGGACGTCAGATTCCTT
                                      ttctgat  putative branch site (score: 3)
                                     tttctgattttttt  CT-rich tract
                                    atttctgattttttt  TA-rich tract