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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttcattgccttctgattcattattctgtgttcaatttcttgtcttcactgtttagtacaatgctcgttaatgataggactatgatctcatatgctcgaagcataaatgatttgtgtttgccacatagactgggcttctctttgtcttttccattgttttctgtggatatttttccttgacgtggcctatagTATTCAACAGCTGTGATGTGTTGAGACCTTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGC

Basic information

species Arabidopsis thaliana
transcript AT5G13570.2
intron # 2
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13570.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA02G08170.1 (Glycine max), 3'ss of exon 2
gtatccttcattgccttctgattcattattctgtgttcaatttcttgtcttcactgtttagtacaatgctcgttaatgataggactatgatctcatatgctcgaagcataaatgatttgtgtttgccacatagac---tgggc-ttctctttgtcttttccattgttttctgtggatatt--tttccttgacgtggcctatagTATTCAACAGCTGTGATGTGTTGAGACCTTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGC
                                                                                                       ||  | ||   | |  |  | ||    ||      ||| | | |||| | ||  |  || | | |    | |||  |  ||||||| || |       ||| ||||| ||||||||||| ||||  ||||||||  | || || |||||||| || || ||||||||||| || |||  ||||||||| || ||||||||
----------------------------------------------------------------------------------------------------ctaaaata-aagctactcatcatggcagtgtattttcatggtcatactctctatccatatcaatttatatattagatgctgttttccttaacat--ttagcagTGTTCAATAGCTGTGATGTTTTGAAGCCTTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGC

upper sequence: AT5G13570.2 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv13s0019g04310.t01 (Vitis vinifera), 3'ss of exon 2
gtatccttcattgccttctgattcattattctgtgttcaatttcttgtcttcactgtttagtacaatgctcgttaatgataggactatgatctcatatgctcgaagcataaatgatttgtgtttgccacatagactgggcttctctttgtcttttc-cattgttttctgtggatatttttccttgacgtggcctatagTATTCAACAGCTGTGATGTGTTGAGACCTTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGC
                                                                                |||||||   |||        | | |     || |||| |          | || |     | ||  ||| ||| |  |||| ||| |   |||  |||||||| || |  | |  |||||| |||||||||||||| ||  ||||||||||| ||||||| |||||||| ||||| ||||||||||| ||||||  |||||| || || ||||||||
--------------------------------------------------------------------------------aggactagcttcttga-----caatgtgatgatcatttat--------tgtggatttattctttcaatgtatttccgtattggtttat---gattgttttccttaacat--ctttcagTATTTAACAGCTGTGATGTTTTACGACCTTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctttgtcttttccattgttttctgtggatatttttccttgacgtggcctatagTATTCAACAGCTGTGATGTGTTGAGACCTTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGC
 ttccttgac  putative branch site 
                             atattttt  TA-rich tract