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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttatcatctctctttgtgtgtttggttttgcttttgctctgtgtttgttcatttgtctttacttcttcactttttatacatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG

Basic information

species Arabidopsis thaliana
transcript AT5G13420.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125324207|gb|EL338287.1|EL338287
EST:     AGGTGTTACTAGCAACCCTGCG                         ATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG
genomic: AGGTGTTACTAGCAACCCTGCGgtaattttat ... acatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG
EST: gi|116415992|gb|EG458584.1|EG458584
EST:     TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCG                         ATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG
genomic: TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttat ... acatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG
EST: gi|164117505|gb|ES087994.1|ES087994
EST:     TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCG                         ATCTTCCAAAA-GCCATTTCCACTTCAAATGCTTATAATGATCAA
genomic: TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttat ... acatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAA
EST: gi|125089797|gb|EL148031.1|EL148031
EST:     TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCG                         ATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTC
genomic: TTCTCCCGTTGATTGCTCGTGGTGTTAGAGGTGTTACTAGCAACCCTGCGgtaattttat ... acatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgctctgtgtttgttcatttgtctttacttcttcactttttatacatttgcagATCTTCCAAAAAGCCATTTCCACTTCAAATGCTTATAATGATCAATTCAG
                                    actttttatacattt  TA-rich tract