Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccctctcctccatgttattatatggcacttgttcctttattcttcaggggaatttatttattgatttctggcttctctatatactgttatagttttagcattttaacttttgagatttgatgtacattgtattggttaagatctagtcattttctttctttcctcttttcagGAGATTATCGCAGTTTACCCTGCCCTATCTCCTCCAACCATGACTCCTGCTCAATCTAACAGGGTGTGCAATGCACTTGCTCTTCTTCAG

Basic information

species Arabidopsis thaliana
transcript AT5G12980.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878482|gb|AU239313.1|AU239313
EST:     TGGCTCCGCTTTTATGGCATTCTGTTGGTACCATTCCTGCTCTTCTACAG                         GAGATTATCGCAGTTTACCCTGCCCTATCTCCTCCAACCATGACTCCTGCT
genomic: TGGCTCCGCTTTTATGGCATTCTGTTGGTACCATTCCTGCTCTTCTACAGgtaccctctc ... ctcttttcagGAGATTATCGCAGTTTACCCTGCCCTATCTCCTCCAACCATGACTCCTGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgtacattgtattggttaagatctagtcattttctttctttcctcttttcagGAGATTATCGCAGTTTACCCTGCCCTATCTCCTCCAACCATGACTCCTGCTCAATCTAACAGGGTGTGCAATGCACTTGCTCTTCTTCAG
 atttgat  putative branch site (score: 5)
                        tctagtcattttcttt  putative PPT
                               attttcttt  TA-rich tract