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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctaactattcccttgtaatctgtccttcatcttttgtgagaatctaaattccaagtttgatctgtttgtttttatgtaaacagGTTGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAG

Basic information

species Arabidopsis thaliana
transcript AT5G12200.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G12200.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA08G18920.1 (Glycine max), 3'ss of exon 2
gtctaactattcccttgtaatctgtccttcatcttttgtgagaatctaaattccaagtt-tgatctgtttgtttttatgtaaacagGTTGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAG
|| |   |  |||  ||  | |   |||||   || ||| |   |||   ||| || || | ||   |||   |     |   |||||||| ||||| || |||||| | ||||| ||||| ||||||||||||||||
gtatgttttctcctctgctacca--ccttctctttctgttactttctgctttctaatttgtaattcattttcatcgcatttggcagGTTGGAGATGAGGTGACTGTCATAGATGCCACTGGCAAGTTTGTCATGCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124709876|gb|EH801278.1|EH801278
EST:     CCAAACATTAAG                         GTTGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCA
genomic: CCAAACATTAAGgtctaactat ... atgtaaacagGTTGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcttttgtgagaatctaaattccaagtttgatctgtttgtttttatgtaaacagGTTGGGGATGAAGTCACTGTCCTCGATGCTACTGGAAAGTTTGTCATGCCAG
                                        tttttat  CT-rich tract
                                    tttgtttttatgtaaa  TA-rich tract