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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttaagaatcctcaattagttttatagctctttcaatctcttttattttcaaacttagagtgattggattctctgtgattgcagAATCATTCCCAAAGCTTTGATGCCAATTGAG

Basic information

species Arabidopsis thaliana
transcript AT5G11950.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125220094|gb|EL234179.1|EL234179
EST:     ATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGG                         AATCATTCCCAAAGCTTTGATGCCAA
genomic: ATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGgttagtttaa ... gtgattgcagAATCATTCCCAAAGCTTTGATGCCAA
EST: gi|125211916|gb|EL226870.1|EL226870
EST:     AGAGTCTATGAAGGTGGTTTACATGTACTTGG                         AATCATTCCCAAAGCTTTGATGCCAATTGAG
genomic: AGAGTCTATGAAGGTGGTTTACATGTACTTGGgttagtttaa ... gtgattgcagAATCATTCCCAAAGCTTTGATGCCAATTGAG
EST: gi|19874754|gb|AU235585.1|AU235585
EST:     ATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGG                         AATCATTCCCAAAGCTTTGATGCCAATTGAG
genomic: ATGGGTTTGATATCCAGGAGAGTCTATGAAGGTGGTTTACATGTACTTGGgttagtttaa ... gtgattgcagAATCATTCCCAAAGCTTTGATGCCAATTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttcaatctcttttattttcaaacttagagtgattggattctctgtgattgcagAATCATTCCCAAAGCTTTGATGCCAATTGAG
                                       ttctctgt  CT-rich tract
           ttttattttcaaactt  TA-rich tract