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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaccagtgggctaatgttacgttgttagatgggagtttagcgaccctaccccatttatcaggagccgtgagttcctttggcaagaaggacacactgattttgctaccaaagaagaggctgatgaggaggtgcttgatgtttgaacatctacagCCGCGTGTATGACTCATGGAGATGACAAAGGTTTAGTATTCCCTCCTAAAGTGGCACCTGTTCAAGTTGTTGTAATCCATGTTCCCATCAAAGGCGCTGC

Basic information

species Arabidopsis thaliana
transcript AT5G10880.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: LOC_Os12g25710.3 (Oryza sativa), 3'ss of exon 5
--------------------------------------gttaaccagtgggctaatgtta--cgttgttagatggga-gtttagcgaccctaccccatttatcaggagccgtgagttcctttggcaagaaggacacactgattttgctaccaaagaagaggctgatgaggaggtgcttgatgtttgaacatctacagCCGCGTGTATGACTCATGGAGATGACAAAGGTTTAGTATTCCCTCCTAAAGTGGCACCTGTTCAAGTTGTTGTAATCCATGTTCCCATCAAAGGCGCTGC
                                        ||   | | ||   || ||   | |   | | ||  |  ||  |  ||  | | ||      |||||||||||||||||||||||||||||| || || | |||||| || ||||| |||||||| || |||                                                                                                                             
cctgtttccatgatggcgaataggtggttgacctatgcactagggaatagggatatattcatcatctctggctgacacattctgtaactattctccg-----cagGAGCCGTGAGTTCCTTTGGCAAGAAGGGCATACAGCTTTTGCAACTAAAGAGGAGGCTGACGAAGAG-----------------------------------------------------------------------------------------------------------------------------

upper sequence: AT5G10880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GRMZM2G094123_T01 (Zea mays), 3'ss of exon 5
-----------------------gttaaccagtg-ggctaatgttacgttgttagatgggagttta------gcgaccctaccccatttat------caggagccgtgagttcctttggcaagaaggacacactgattttgctaccaaagaagaggctgatgaggaggtgcttgatgtttgaacatctacagCCGCGTGTATGACTCATGGAGATGACAAAGGTTTAGTATTCCCTCCTAAAGTGGCACCTGTTCAAGTTGTTGTAATCCATGTTCCCATCAAAGGCGCTGC
                       |   |    ||   | | |  | |  || |    | | ||||       | || | | |   | ||||      |||||||||||| || || |||||||| || || |||| |||||| || ||||||||||| ||||| |||                                                                                                                             
tttaatgtatcctttgtttatgtgcatatggctgtacccagtcctcccctggtgtgcgcgtgttttttccttgtgaacattctgtagttattctcttcagGAGCCGTGAATTTCTGTGGCAAGAGGGGCATACTGCTTTTGCGACTAAAGAAGAGGCAGATGAAGAG-----------------------------------------------------------------------------------------------------------------------------

upper sequence: AT5G10880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA03G38340.1 (Glycine max), 3'ss of exon 6
-------------------------------gttaaccagtgggc-taatgttacgttgt--tagatgggagtttagcgaccctaccccatttat--caggagccgtgagttcctttggcaagaaggacacactgattttgctaccaaagaagaggctgatgaggaggtgcttgatgtttgaacatctacagCCGCGTGTATGACTCATGGAGATGACAAAGGTTTAGTATTCCCTCCTAAAGTGGCACCTGTTCAAGTTGTTGTAATCCATGTTCCCATCAAAGGCGCTGC
                               || ||  |||     |  ||  || ||||  |||      || | | |    ||     || ||  |||||| |||||||| |||||||||||||| ||||||| ||||||| | || || || || ||||  |||                                                                                                                             
ttaatatggttttggatactgttgctttcatgtaaaatagtttatattctggaactttgtcctagtccattgtgtggtgcttatagaagtttgattgcagGAGTCGTGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAG-----------------------------------------------------------------------------------------------------------------------------

upper sequence: AT5G10880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA19G40930.1 (Glycine max), 3'ss of exon 6
-------------------------------gttaaccagtgggc-taatgttacgttgt-tagatgggagtttagcgaccctaccccattta---tcaggagccgtgagttcctttggcaagaaggacacactgattttgctaccaaagaagaggctgatgaggaggtgcttgatgtttgaacatctacagCCGCGTGTATGACTCATGGAGATGACAAAGGTTTAGTATTCCCTCCTAAAGTGGCACCTGTTCAAGTTGTTGTAATCCATGTTCCCATCAAAGGCGCTGC
                               || ||| | |     | |||  || |||| |||      || | | |  | ||     |||    ||||||| || ||||| |||||||||||||| ||||||| |||||| || || || || || ||||  |||                                                                                                                             
ttaatatggttttggatactgttgctgttatgtaaactaatttatattatggaactttgtctagtccattgtgtggtgctcatagaagttttgatttcagGAGTCGCGAGTTTCTTTGGCAAGAAGGGCACACTGCTTTTGCAACAAAGGATGAAGCAGATGCAGAG-----------------------------------------------------------------------------------------------------------------------------

upper sequence: AT5G10880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ15689 (Selaginella moellendorffii), 3'ss of exon 4
gttaaccagtgggctaatgttacgttgttagatgggagtttagcgaccctaccccatttatcaggagccgtgagttcctttggcaagaaggacacactgattttgctaccaaagaagaggctgatgaggaggtgcttg--atgtttgaacatctacagCCGCGTGTATGACTCATGGAGATGACAAAGGTTTAGTATTCCCTCCTAAAGTGGCACCTGTTCAAGTTGTTGTAATCCATGTTCCCATCAAAGGCGCTGC
        || |  |    |    |   |   || ||   ||     | ||   |  || ||||||| |||||||| |||||||||||||| ||||| | || ||| ||||| ||||| || |||||||| |||  ||   || |||| | ||||  |  | |||                                                                                             
--------gtagcttctcctcgattctctttctgagatgata-----cgtaattctcttttcagGAGTCGTGAGTTTCTTTGGCAAGAAGGCCACACCGCTTATGCAACCAAGGAAGAAGCGGATGAGGAAGTGTATGCGGTGCTTGATC-TCTATCGAAGAGTG---------------------------------------------------------------------------------------------

upper sequence: AT5G10880.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: EFJ38227 (Selaginella moellendorffii), 3'ss of exon 4
gttaaccagtgggctaatgttacgttgttagatgggagtttagcgaccctaccccatttatcaggagccgtgagttcctttggcaagaaggacacactgattttgctaccaaagaagaggctgatgaggaggtgcttg--atgtttgaacatctacagCCGCGTGTATGACTCATGGAGATGACAAAGGTTTAGTATTCCCTCCTAAAGTGGCACCTGTTCAAGTTGTTGTAATCCATGTTCCCATCAAAGGCGCTGC
        || |  |    |    |   |   || ||   ||     | ||   |  || ||||||| |||||||| |||||||||||||| ||||| | || ||| |||||  |||| || |||||||| |||  ||   || |||| | ||||  |  | |||                                                                                             
--------gtagcttctcctcgattctctttctgagatgata-----cgtaattctcttttcagGAGTCGTGAGTTTCTTTGGCAAGAAGGCCACACCGCTTATGCAACCAAGAAAGAAGCGGATGAGGAAGTGTATGCGGTGCTTGATC-TCTATCGAAGAGTG---------------------------------------------------------------------------------------------