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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgataattttattaaagcattgttctttttacagctgaagtttgcattgttgtgatccagtttctcaaatctgaatcttgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATCTGCGGTAGCTATTAAAAACGTTACCATTAATGACAATTTCTTTCCTGGG

Basic information

species Arabidopsis thaliana
transcript AT5G10160.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19874760|gb|AU235591.1|AU235591
EST:     TTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAG                         ATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATC
genomic: TTTCCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAGgtgataattt ... tgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATC
EST: gi|164071885|gb|ES138151.1|ES138151
EST:     GTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAG                         ATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTAT
genomic: GTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAGgtgataattt ... tgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTAT
EST: gi|116479877|gb|EG522469.1|EG522469
EST:     CCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAG                         ATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATC
genomic: CCGACAGTGATGGACATCAATAAGATACAAGAGATTTTGCCTCACAGgtgataattt ... tgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATC
EST: gi|124881140|gb|EH960042.1|EH960042
EST:     AGATTTTGCCTCACAG                         ATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTAAT
genomic: AGATTTTGCCTCACAGgtgataattt ... tgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTA-T


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgaagtttgcattgttgtgatccagtttctcaaatctgaatcttgttgtgtagATTCCCATTTCTGTTAGTTGATAGAGTGATAGAGTACACAGCTGGTGTATCTGCGGTAGCTATTAAAAACGTTACCATTAATGACAATTTCTTTCCTGGG
                                          tcttgtt  CT-rich tract