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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcacacttacttgtttcaacaagttttaacctttgtctgatcttatgtatctgacaaaggtttcttattgttttcagGAAGTCCAAGGGTTGAAGGAGATGAGGAGGATGATGGAATTGATGATCTTGATTTTGAGTTTGATTATAGTAGGAGTGGCCTTGAATCTGAAACTTTCTC

Basic information

species Arabidopsis thaliana
transcript AT5G09870.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125267677|gb|EL281762.1|EL281762
EST:     TCCTCAGTGCAAAACTCGTTACAAGCGCATCAAAG                         GAAGTCCAAGGGTTGAAGGAGATGAGGAGGATGATGGAATTGATGATCTTG
genomic: TCCTCAGTGCAAAACTCGTTACAAGCGCATCAAAGgtcacactta ... ttgttttcagGAAGTCCAAGGGTTGAAGGAGATGAGGAGGATGATGGAATTGATGATCTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttaacctttgtctgatcttatgtatctgacaaaggtttcttattgttttcagGAAGTCCAAGGGTTGAAGGAGATGAGGAGGATGATGGAATTGATGATCTTGATTTTGAGTTTGATTATAGTAGGAGTGGCCTTGAATCTGAAACTTTCTC
                                      tttcttattgttttc  CT-rich tract
                                      tttcttattgtttt  TA-rich tract