Sequence
atgc intronic sequence ATGC exonic sequencegtaagcaaagctttcttttcttagtcctctttttcctaaatacattttgatgtgttggttaatgaaagagacaatttgtttatgcagGCCTGAAGGGAGAGTCAAACAAGAGGCTTATTCCAATGGATGAAGTAAAGAAACACCGAACAGGAGATTCGATGTGGACTGTTTTGAAAGGTCGTGTATA
Basic information
species | Arabidopsis thaliana |
transcript | AT5G09680.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124978804|gb|EL051932.1|EL051932EST: AGCCAAATGGATTGGTTGAAACTTACACGAACACATCCCGTATCTTGCAG GCCTGAAGGGAGAGT
genomic: AGCCAAATGGATTGGTTGAAACTTACACGAACACATCCCG-ATCTTGCAGgtaagcaaag ... gtttatgcagGCCTGAAGGGAGAGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttcctaaatacattttgatgtgttggttaatgaaagagacaatttgtttatgcagGCCTGAAGGGAGAGTCAAACAAGAGGCTTATTCCAATGGATGAAGTAAAGAAACACCGAACAGGAGATTCGATGTGGACTGTTTTGAAAGGTCGTGTATA
tttgttt CT-rich tract
aaatacattttgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcaaagctttcttttcttagtcctctttttcctaaatacattttgatgtgttggttaatgaaagagacaatttgtttatgcagGCCTGAAGGGAGAGTCAAACAAGAGGCTTATTCCAATGGATGAAGTAAAGAAACACCGAACAGGAGATTCGATGTGGACTGTTTTGAAAGGTCGTGTATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT