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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataatgcctaatgattcctcactccatttggttttgttgagttttaaacactaagaatttatctttttaaattcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG

Basic information

species Arabidopsis thaliana
transcript AT5G09660.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47830941|gb|CK120625.1|CK120625
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|47830575|gb|CK120259.1|CK120259
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|116459617|gb|EG502209.1|EG502209
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|86086458|gb|DR382217.1|DR382217
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|124998036|gb|EL070305.1|EL070305
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAG
EST: gi|124970063|gb|EL043919.1|EL043919
EST:     CTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: CTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|124906230|gb|EH980310.1|EH980310
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGG
EST: gi|124977408|gb|EL050735.1|EL050735
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAAGAAGTTCTTGGCCTTGATCCAAGAG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCA-GAAGTTCTTGGCCTTGATCCAAGAG
EST: gi|125245869|gb|EL259954.1|EL259954
EST:     TCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: TCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|124951416|gb|EL026786.1|EL026786
EST:     CCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: CCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|116459695|gb|EG502287.1|EG502287
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|124985385|gb|EL057979.1|EL057979
EST:     GCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTAGTG                         GCAGAAGTTCTTGGCCTTGATCCAA
genomic: GCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTT-GTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAA
EST: gi|124798636|gb|EH888315.1|EH888315
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTT
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTT
EST: gi|124730056|gb|EH821458.1|EH821458
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGAT
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGAT
EST: gi|116459539|gb|EG502131.1|EG502131
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|125025297|gb|EL097566.1|EL097566
EST:     CAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: CAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|125309257|gb|EL323342.1|EL323342
EST:     CACATTTGTTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGG
genomic: CACATTTG-TGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGG
EST: gi|125312035|gb|EL326120.1|EL326120
EST:     CTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAG
genomic: CTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAG
EST: gi|124709103|gb|EH800505.1|EH800505
EST:     GTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: GTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|125210593|gb|EL225547.1|EL225547
EST:     TGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: TGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|125193416|gb|EL208370.1|EL208370
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAG
EST: gi|124940683|gb|EL017113.1|EL017113
EST:     CTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: CTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|125004599|gb|EL076868.1|EL076868
EST:     ACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: ACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
EST: gi|125176549|gb|EL195850.1|EL195850
EST:     AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGG
genomic: AGCTCCTTGGAGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGG
EST: gi|125289101|gb|EL303186.1|EL303186
EST:     AGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTG                         GCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG
genomic: AGTTACTACACTCGATGTTGCTCGTGCCAACACATTTGTGgtaataatgc ... tcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggttttgttgagttttaaacactaagaatttatctttttaaattcttgtgcagGCAGAAGTTCTTGGCCTTGATCCAAGAGAAGTCGATGTGCCAGTAGTTGGGGGACACGCCGGAGTCACAATCTTGCCACTACTGTCACAG
                                            ttcttgt  CT-rich tract
              ttttaaacactaagaa  TA-rich tract