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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tacgtaagttaggtattagctaagctcaagacttttgtttttgtaattactggcctggcttgtaatgtatcatccgtttttgattgtgtttattttgcagAGTACAAG

Basic information

species Arabidopsis thaliana
transcript AT5G08450.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124781150|gb|EH871093.1|EH871093
EST:     AGTCAGGACAACGAAGG                         AGTACAAG
genomic: AGTCAGGACAACGAAGGgtgcgtctct ... tattttgcagAGTACAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactggcctggcttgtaatgtatcatccgtttttgattgtgtttattttgcagAGTACAAG
                                ttttgat  putative branch site (score: 4)
                                           tttatttt  putative PPT
                                     attgtgtttatttt  TA-rich tract