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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgttttatttttcattttcctggtcaaagaacagaaatatatatctcttttcgcccctaatgattctctaggattttccctagagctctgttgacatttccattgcatgactttagggtctctctgaccaaatttgtggtatatatgttgttttcatggtagtgttttttcctctctaccttccttagAAATCAGGAGAATCCTTGCCCCAGACATCTGATCTAGGAAACCACTCTAATACTACAACCGGTGGGTCTTCCCCGTTACACCAGTCGGCCGCTGGTATTA

Basic information

species Arabidopsis thaliana
transcript AT5G08440.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125134148|gb|EL175221.1|EL175221
EST:     CCTCTTAAAGGCTGAACTTCAGAGAAGATATCTGGAGCTTGCCAAATAT                         AAATCAGGAGAATCCTTGCCCCAGACATCTGATCTAGGAAACCACTCTAAT
genomic: CCTCTTAAAGGCTGAACTTCAGAGAAGATATCTGGAGCTTGCCAAATATgtaagtcgtt ... ccttccttagAAATCAGGAGAATCCTTGCCCCAGACATCTGATCTAGGAAACCACTCTAAT
EST: gi|116441740|gb|EG484332.1|EG484332
EST:     ACCTCTTAAAGGCCGAACTTCAGAGAAGATATCTGGAGCTTGCCAAATAT                         AAATCAGGAGAATCCTTGCCCCAGACATCTGATCTAGGAAACCACTCTAAT
genomic: ACCTCTTAAAGGCTGAACTTCAGAGAAGATATCTGGAGCTTGCCAAATATgtaagtcgtt ... ccttccttagAAATCAGGAGAATCCTTGCCCCAGACATCTGATCTAGGAAACCACTCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtggtatatatgttgttttcatggtagtgttttttcctctctaccttccttagAAATCAGGAGAATCCTTGCCCCAGACATCTGATCTAGGAAACCACTCTAATACTACAACCGGTGGGTCTTCCCCGTTACACCAGTCGGCCGCTGGTATTA
                          tagtgttttttcctct  CT-rich tract
      tatatatgttgtttt  TA-rich tract