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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcaaataaaaacaatccaagctttgctctgtttcttgctctgttttacaactctgtttttgttttgttttgtttttttttccatttgtttgataatttttggggtttggttccatttggcagAATGAATGGGTGATCTGCAGGGTATTTCATAAAACTGCTGGAGGTAAGAAGATCCCGATTTCGACGTTAATCCGAATCGGTTCTTACGGAACCGGGTCTA

Basic information

species Arabidopsis thaliana
transcript AT5G07680.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07680.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv17s0000g06400.t01 (Vitis vinifera), 3'ss of exon 2
gtcaaataaaaacaatccaagctttgctctgtttcttgctctgttttacaactctgtttttgttttgttttgtttttttttccatttgtttgataa--tttttggggtttggttccatttggcagAATGAATGGGTGATCTGCAGGGTATTTCATAAAACTGCTGGAGGTAAGAAGATCCCGATTTCGACGTTAATCCGAATCGGTTCTTACGGAACCGGGTCTA
                        |  ||  |||    ||| | |||    | ||||||||  | |||||  |||  | | ||  |||| | ||    ||| |    |||  ||   | | |||||||||||||||||| ||||||||||| || || | | | || || ||||| | ||  |||||   | ||    || |  | ||||| ||||  |  |  |
-----------------------gtattcctttttccactcagatttc---ccctgttttt-ctctgttt--tttgctatgcctgttgtctaatggactttcttttattttattttttattgcagAATGAATGGGTGATTTGCAGGGTATTCCAAAAGAGTTCCGGTGGGAAGAAAACCCATATTTCAGGGATAGGGAGATTAAGCTCTTATGGAAATGAATTGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgtttttttttccatttgtttgataatttttggggtttggttccatttggcagAATGAATGGGTGATCTGCAGGGTATTTCATAAAACTGCTGGAGGTAAGAAGATCCCGATTTCGACGTTAATCCGAATCGGTTCTTACGGAACCGGGTCTA
                   gtttgat  putative branch site (score: 5)
                                          ttccattt  putative PPT
     ttttttttccatttgt  TA-rich tract