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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatcgttttggtattgatgctatttttagatagttattggaattttgttatgtttggtttgttggagatatctctaaaatttgtaccttttgggcagGTTCTAATTTATTCTCCAGATGGTAGGTGTCTGTTTAAGTACCAGGCATATGAATGTGGACTTGGTGTCAAGACTGTTTCCTGGTCTCCGTGTGGTCAGT

Basic information

species Arabidopsis thaliana
transcript AT5G07590.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07590.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA20G33770.1 (Glycine max), 3'ss of exon 2
gtatgtatcgttttggtattgat-----gctat-ttttagatagttattggaattttgttatgtttggtttgttggagatatctctaaaatttgtaccttttgggcagGTTCTAATTTATTCTCCAGATGGTAGGTGTCTGTTTAAGTACCAGGCATATGAATGTGGACTTGGTGTCAAGACTGTTTCCTGGTCTCCGTGTGGTCAGT
       | | ||| |||||  |     | |||  | || ||  || |||||| ||| |  ||| |      |||   | | ||     |||| |   |||     |||||||||| ||||||||||| || ||||| || || ||||| || ||||||||| ||||| | || || || | ||| ||||||||||| ||||||||||
------gttgcttttgtattactcgctggttatgctataaattattgttggaaatttatgctgtatttacaattgcctaaaacttagtcatttatg--tttgatatagGTTCTAATATATTCTCCAGACGGAAGGTGCCTTTTCAAGTATCAAGCATATGAAAGTGGATTAGGAGTTAAAAGTGTGTCCTGGTCTCCTTGTGGTCAGT

upper sequence: AT5G07590.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G33830.1 (Glycine max), 3'ss of exon 2
-----gtatgtatcgttttggtattgatgctatttttagatagttattggaattttgttatgtttggtttgttggagatatctctaaaatttgtaccttttgggcagGTTCTAATTTATTCTCCAGATGGTAGGTGTCTGTTTAAGTACCAGGCATATGAATGTGGACTTGGTGTCAAGACTGTTTCCTGGTCTCCGTGTGGTCAGT
      | |||||   |  | |  | |||||||    | ||  || |  ||| ||| |  ||| |      ||    | | ||     |||| |   |||     |||||||||| ||||||||||| || ||||| || || ||||| || ||||||||| ||||| | ||  | || | ||| ||||||||||| ||||||||||
gttgcttttgtataactc-gctggttatgctat----aaattattgtctgaaatttatgctgtatttgcaattacctaaaacttagtcatttatg--tttgatatagGTTCTAATATATTCTCCAGACGGAAGGTGCCTTTTCAAGTATCAAGCATATGAAAGTGGATTAGGGATTAAAAGTGTGTCCTGGTCTCCTTGTGGTCAGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgttatgtttggtttgttggagatatctctaaaatttgtaccttttgggcagGTTCTAATTTATTCTCCAGATGGTAGGTGTCTGTTTAAGTACCAGGCATATGAATGTGGACTTGGTGTCAAGACTGTTTCCTGGTCTCCGTGTGGTCAGT
                             ctctaaa  putative branch site (score: 3)
                                         tacctttt  putative PPT
                         atatctctaaaattt  TA-rich tract