1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagggtcttttatcatttgttcttgatctaggatttaaagttgacaactttgggggttatagattgaatctagggatttgaattaagggttttgattttttggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTGCTGTAGCAGATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTA
species | Arabidopsis thaliana |
transcript | AT5G07440.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|116477118|gb|EG519710.1|EG519710
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGTACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|125215457|gb|EL229541.1|EL229541
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: CCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|125244419|gb|EL258504.1|EL258504
genomic: CCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGEST: gi|116402429|gb|EG445021.1|EG445021
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAG
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|116401885|gb|EG444477.1|EG444477
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|116416105|gb|EG458697.1|EG458697
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|116402751|gb|EG445343.1|EG445343
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|301501353|gb|HO206893.1|HO206893
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|116401660|gb|EG444252.1|EG444252
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|116445210|gb|EG487802.1|EG487802
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTEST: gi|124859012|gb|EH943449.1|EH943449
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGEST: gi|116485622|gb|EG528214.1|EG528214
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACG
EST: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAG GTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
genomic: ATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATATCATCCTGAGgtagggtctt ... tggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACT
gttatagattgaatctagggatttgaattaagggttttgattttttggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTGCTGTAGCAGATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTA
ttttgat putative branch site (score: 4)
tttttt CT-rich tract
ttttgatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagggtcttttatcatttgttcttgatctaggatttaaagttgacaactttgggggttatagattgaatctagggatttgaattaagggttttgattttttggtttgaagGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGACTGCTGTAGCAGATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA