1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgcaatttgggtggatttagtcttcattcttctagttgtgttattctgttgctagaaatctgaatcttggtttcttgaaattttcagTTAGAATCGGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGTCGTCGTTGTTTATCAGAAACAGTATCTCTGTTGGAGCTTCTGGTGCTCT
species | Arabidopsis thaliana |
transcript | AT5G07250.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTG TTAGAATCGGAGTTATATACCTATTAATCAGGAATTGGAGGGAGTGTATTGEST: gi|125208274|gb|EL223228.1|EL223228
genomic: GTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTGgtatgcaatt ... aaattttcagTTAGAATCGGAGTTATATACCTATTA-TCAGGAATTGGAGGGAGTGTATTG
EST: GTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTG TTAGAATCGGAGTTATAEST: gi|124720094|gb|EH811496.1|EH811496
genomic: GTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTGgtatgcaatt ... aaattttcagTTAGAATCGGAGTTATA
EST: GTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTG TTAGAATCGGAGTTATEST: gi|47831274|gb|CK120958.1|CK120958
genomic: GTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTGgtatgcaatt ... aaattttcagTTAGAATCGGAGTTAT
EST: GTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTG TTAGAATCGGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGT
genomic: GTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTGgtatgcaatt ... aaattttcagTTAGAATCGGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGT
tagttgtgttattctgttgctagaaatctgaatcttggtttcttgaaattttcagTTAGAATCGGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGTCGTCGTTGTTTATCAGAAACAGTATCTCTGTTGGAGCTTCTGGTGCTCT
ttttc CT-rich tract
tttcttgaaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaatttgggtggatttagtcttcattcttctagttgtgttattctgttgctagaaatctgaatcttggtttcttgaaattttcagTTAGAATCGGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGTCGTCGTTGTTTATCAGAAACAGTATCTCTGTTGGAGCTTCTGGTGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT