1 5' 3' | 2 5' 3' | 3 5' 3' |
...gagacttgattaatgattagctctttgcacaagtagacagaccctttgtgtcatcttggcttatcaaactataagtcaatattgtgtttcatttgtgcagGTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGTTCTCACTTGACCCTTCATTTCCGCGGTTCCATCTCGCTGAAGAACTACAAAGACCTG
species | Arabidopsis thaliana |
transcript | AT5G06750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATATCGTTGTCCTTAAACATGGTGTGTGGCGCATCAAAGGCATCATTCAG GTATCTAGATCAATAGGGGATGCATACTTAAAGCGCCCAGAGTTCTCACTTEST: gi|116460690|gb|EG503282.1|EG503282
genomic: ATATCGTTGTCCTTAAACATGGTGTGTGGCGCATCAAAGGCATCATTCAGgtttgcaaag ... atttgtgcagGTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGTTCTCACTT
EST: ATATCGTTGTCCTTAAACATGGTGTGTGGCGCATCAAAGGCATCATTCAG GTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGTTCTCACTTEST: gi|116460680|gb|EG503272.1|EG503272
genomic: ATATCGTTGTCCTTAAACATGGTGTGTGGCGCATCAAAGGCATCATTCAGgtttgcaaag ... atttgtgcagGTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGTTCTCACTT
EST: ATATCGTTGTCCTTAAACATGGTGTGTGGCGCATCAAAGGCATCATTCAG GTATTTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGTTCTCACTT
genomic: ATATCGTTGTCCTTAAACATGGTGTGTGGCGCATCAAAGGCATCATTCAGgtttgcaaag ... atttgtgcagGTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGTTCTCACTT
ttgtgtcatcttggcttatcaaactataagtcaatattgtgtttcatttgtgcagGTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGTTCTCACTTGACCCTTCATTTCCGCGGTTCCATCTCGCTGAAGAACTACAAAGACCTG
tttcattt CT-rich tract
ttatcaaactataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagacttgattaatgattagctctttgcacaagtagacagaccctttgtgtcatcttggcttatcaaactataagtcaatattgtgtttcatttgtgcagGTATCTAGATCAATAGGGGATGCATATTTAAAGCGCCCAGAGTTCTCACTTGACCCTTCATTTCCGCGGTTCCATCTCGCTGAAGAACTACAAAGACCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - gcacaag
- - - - - - - - - - - - - - - - - agacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtcaa