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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttacaaatcaaaaccacttgttacattcatttttgttgattttataaaatgctaaaatgtgattgctttgtgccgtagGAGAATCCTGATGCTGGGCAGTATCGGTTGAGTGTTCCGCATGATCTCAAGAAGCTAGAGATTCTCTTTGCGGGTTGTAATGTAGAGGTGAAAAATGATG

Basic information

species Arabidopsis thaliana
transcript AT5G05800.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86071141|gb|DR366898.1|DR366898
EST:     AGAGCAACAGGTTTCGTGCAACTGATGATGACTGGGCTAACTATTTACAG                         GAGAATCCTGATGCTGGGCAGTATCGGTTGAGTGTTCCGCATGATCTCAAG
genomic: AGAGCAACAGGTTTCGTGCAACTGATGATGACTGGGCTAACTATTTACAGgtttacaaat ... tgtgccgtagGAGAATCCTGATGCTGGGCAGTATCGGTTGAGTGTTCCGCATGATCTCAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcatttttgttgattttataaaatgctaaaatgtgattgctttgtgccgtagGAGAATCCTGATGCTGGGCAGTATCGGTTGAGTGTTCCGCATGATCTCAAGAAGCTAGAGATTCTCTTTGCGGGTTGTAATGTAGAGGTGAAAAATGATG
                          tgctaaa  putative branch site (score: 2)
                                       ttgcttt  putative PPT
     atttttgttgatttta  TA-rich tract