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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttagacatgtgatggctactttttgtcattaattttatattgtcattgcatctcatagtagattgtggccattagtatttattccttttcctttgcccagtgcagATTTAATGTTTTGGGATTGCATGAGTTCGATAGTGACCGAAAAAGAATGTCAGTGATACTGGGATGCCCCGACATGTCGGTGAAACTCTTTGTAAAAGGT

Basic information

species Arabidopsis thaliana
transcript AT5G04930.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04930.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv13s0047g01210.t01 (Vitis vinifera), 3'ss of exon 2
gtaatttagacatgtgatggctactttttgtcattaattttatattgtcattgcatctcatagtagattgtggccattagtatttattccttttcctttgcccagtgcagATTTAATGTTTTGGGATTGCATGAGTTCGATAGTGACCGAAAAAGAATGTCAGTGATACTGGGATGCCCCGACATGTCGGTGAAACTCTTTGTAAAAGGT
       ||| |    ||   || || || | |||||   |  | | |  |   ||        |   | |  |  ||  | ||    | | |     |   |||||||| ||| |||||||||| ||||||||||| ||||||||||| ||||| |||||||| ||| |||| ||||| ||||   | |||||| | ||||||||||||
-------agaaac---atttttaattgtttttattaagaatgaactttgttcaaatacgggcccatcctatttcttttctttttctaacttgtcatcattggcagtgcagGTTTGATGTTTTGGGTTTGCATGAGTTTGATAGTGACCGTAAAAGGATGTCAGTTATATTGGGGTGCCCTGACAACACTGTGAAAGTTTTTGTAAAAGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctcatagtagattgtggccattagtatttattccttttcctttgcccagtgcagATTTAATGTTTTGGGATTGCATGAGTTCGATAGTGACCGAAAAAGAATGTCAGTGATACTGGGATGCCCCGACATGTCGGTGAAACTCTTTGTAAAAGGT
                         tatttattccttttcc  CT-rich tract
                    attagtatttatt  TA-rich tract