Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcttccgattcaattatgcttccatggtataagatttggtttggctttgataatgaatcctggaactagttcaagctttgataattgaagggttcttcacaaaaatcgttttttttttctttcttagattccttatttgttgggttcagggaacctacatttgttcctcattttgtagGTATGTGCCTGGTAATGGTTTTCATGCCATAGCTGCTCACACCGATAGCCCGTGTCTTAAACTTAAACCGAAGTCTGCTTCATCCAAGTCTGGCTATCTC

Basic information

species Arabidopsis thaliana
transcript AT5G04710.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04710.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: Vv13s0106g00700.t01 (Vitis vinifera), 3'ss of exon 3
gtgagtcttccgattcaattatgcttccatggtataagatttggtttggctttgataatgaatcctggaactagttcaagctttgataattgaagggttcttcacaaaaatcgttttttttttctttcttagattccttatttgttgggttcagggaacctacatttgttcctcattttgtagGTATGTGCCTGGTAATGGTTTTCATGCCATAGCTGCTCACACCGATAGCCCGTGTCTTAAACTTAAACCGAAGTCTGCTTCATCCAAGTCTGGCTATCTC
                                                                                 | |||||    |    ||       ||  ||  ||| || || ||  ||   |  |||   | |  |||   |  ||   |    | ||  |  ||||  |||||      ||||||||||||||| |  || ||||| ||||| |||||||| ||||| ||||| || || ||||||||  | || || ||||| ||||| 
------------------------------------------------------------------------------gtttgtgatagcctacaacttt-----gaagttcactttgttctttttctttgattaactttactttgtggtatcgttaatgaaaggcttttgttagtttttcagGTACAGTGTTGGTAATGGTTTTCACGTGATTGCTGCACACACAGATAGCCCATGTCTAAAACTAAAGCCAAAGTCTGCAGCTTCAAAATCTGGTTATCTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124834013|gb|EH918452.1|EH918452
EST:     TTCTTTACACGAAACATGTCCTGTTTGGTTGCTTTTGCTGTCGGAGAAAA                         GTATGTGCCTGGTAATGGTTTTCATGCCATAGCTGCTCACACC
genomic: TTCTTTACACGAAACATGTCCTGTTTGGTTGCTTTTGCTGTCGGAGAAAAgtgagtcttc ... cattttgtagGTATGTGCCTGGTAATGGTTTTCATGCCATAGCTGCTCACACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagattccttatttgttgggttcagggaacctacatttgttcctcattttgtagGTATGTGCCTGGTAATGGTTTTCATGCCATAGCTGCTCACACCGATAGCCCGTGTCTTAAACTTAAACCGAAGTCTGCTTCATCCAAGTCTGGCTATCTC
                                    tttgttcctcatttt  CT-rich tract
         ttatttgtt  TA-rich tract