1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaagttgacactcatttagcctaatgtgctattatatatatttagtgtcaggcttgtttgcccgccttttctttcagtattctttttctggatactttcttggttttaaactaatgatgataatgactcatcttgtagGTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGCCTGGCAGAACCAATAGGTTATGTTCCAAAGGAAGATATTTTGTATGCTG
species | Arabidopsis thaliana |
transcript | AT5G04590.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGTTTCAATATTTAT GTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTT-GCCCGCEST: gi|124947352|gb|EL023197.1|EL023197
genomic: GGGTTTCAATATTTATgtaagttgac ... catcttgtagGTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGC
EST: GTTGTTGTTTCAGATGAAAATGGGGAACCACAGGGTTTCAATATTTAT GTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTAEST: gi|125271746|gb|EL285831.1|EL285831
genomic: GTTGTTGTTTCAGATGAAAATGGGGAACCACAGGGTTTCAATATTTATgtaagttgac ... catcttgtagGTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTA
EST: TTTCAATATTTAT GTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGCEST: gi|124866389|gb|EH950826.1|EH950826
genomic: TTTCAATATTTATgtaagttgac ... catcttgtagGTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGC
EST: TTGTTGTTGTTTCAGATGAAAATGGGGAACCACAGGGTTTCAATGTTTAT GTTGGTGGGGGTATGGGAAGAACACAACAGAATGGAGTCTACTTTTGCCCGEST: gi|164029821|gb|ES088571.1|ES088571
genomic: TTGTTGTTGTTTCAGATGAAAATGGGGAACCACAGGGTTTCAATATTTATgtaagttgac ... catcttgtagGTTGGTGGGGGTATGGGAAGAACACA-CAGAATGGAGTCTACTTTTGCCCG
EST: GGGTTTCAATATTTAT GTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGCEST: gi|125187270|gb|EL202224.1|EL202224
genomic: GGGTTTCAATATTTATgtaagttgac ... catcttgtagGTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGC
EST: TTGTTGTTGTTTCAGATGAAAATGGGGAACCACAGGGTTTCAATGTTTAT GTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGC
genomic: TTGTTGTTGTTTCAGATGAAAATGGGGAACCACAGGGTTTCAATATTTATgtaagttgac ... catcttgtagGTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGC
ttttctggatactttcttggttttaaactaatgatgataatgactcatcttgtagGTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGCCTGGCAGAACCAATAGGTTATGTTCCAAAGGAAGATATTTTGTATGCTG
aactaat putative branch site (score: 2)
ctcatctt putative PPT
ttttaaactaatgatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgacactcatttagcctaatgtgctattatatatatttagtgtcaggcttgtttgcccgccttttctttcagtattctttttctggatactttcttggttttaaactaatgatgataatgactcatcttgtagGTTGGTGGGGGTATGGGAAGAACACACAGAATGGAGTCTACTTTTGCCCGCCTGGCAGAACCAATAGGTTATGTTCCAAAGGAAGATATTTTGTATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG