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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggccttttatttcatttaaactttcacttctgttatgtggagatatgaggcagtgttttcttataactacttccattctctgctatatctatgtttatttatgtttgtttgcctacgtagGTTGGTACAAAATCCTGGTGAATTTGTTGTGACTTTTCCGAGGTCTTATCATGTAGGATTCAGCCACG

Basic information

species Arabidopsis thaliana
transcript AT5G04240.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G04240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA10G35350.1 (Glycine max), 3'ss of exon 4
------------------------------------------------gtaggccttttatttcatttaaactttcacttctgttatgtggagata---tgaggcagtgttttcttataactacttccattctctgctata---tctatgtttatttatgt--ttgtttgcctacgtagGTTGGTACAAAATCCTGGTGAATTTGTTGTGACTTTTCCGAGGTCTTATCATGTAGGATTCAGCCACG
                                                 ||     | |  ||       | | | | ||    ||||| |  | |   ||  || |   |||||    | || | |||||||||    |    |  |   |||| |||||  |   || |||   ||||||    ||  | |||||||||||||||||||||||||| ||  |||||||||||||||||||||| |
gtcagttgcttaacatatattcttttatgttatgaatatcttgtgatgttaaattatatgcttacaacttattattatttaaaatatgtagttagaggttgttgctggcatttctgccgaata-tcccattctctttcttgaacttcaaacttatgtatgtggtgtctttcctttctagGTTAACTCAGCACCCTGGTGAATTTGTTGTGACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATG

upper sequence: AT5G04240.1 (Arabidopsis thaliana), 3'ss of exon 2
lower sequence: GLYMA20G32160.1 (Glycine max), 3'ss of exon 2
---------------------gtaggccttttatttcatttaaactt--tcac-ttctgttatgtg---gagatatgaggcagtgttttcttataactacttccattctctgctata-tctatgtttatttatgt-ttgt-ttgcctacgtagGTTGGTACAAAATCCTGGTGAATTTGTTGTGACTTTTCCGAGGTCTTATCATGTAGGATTCAGCCACG
                     |     ||||||| | ||  | |  |  | |  ||   |||| ||    || |    |   |  |||      ||   | |    ||| |  |  | |  |   |||| ||||   ||| || |||   ||||||    ||  | ||||||||||||||||| |||||||| ||  |||||||||||||||||||||| |
gtcagttgattaacatattttgatattcttttatgttatgaatatctcatgatgttaaattatttgcttaaggttgttgctggcatttctgccgaatctcctattctctttcttgaacttcaaacttatgtatgcgctgtctttcctttctagGTTAACTCAGCACCCTGGTGAATTTGTTGTAACTTTTCCAAGAGCTTATCATGTAGGATTCAGCCATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actacttccattctctgctatatctatgtttatttatgtttgtttgcctacgtagGTTGGTACAAAATCCTGGTGAATTTGTTGTGACTTTTCCGAGGTCTTATCATGTAGGATTCAGCCACG
 ttataac  putative branch site (score: 2)
                                          tttgcct  putative PPT
                  tatatctatgtttatt  TA-rich tract