1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtataggaatgagctaaaggtcctgtcggtttgcatttttattcttataaggcgttaagccagaagttgatttctcttctatttctctgtgttatatagATACGAAGACTCTGAGAATAGTTACCAGAAATATCTGGAATTCAAATCAGGAGATTCGAATGCTGAGAAAGAACTCTCTCAGCTTCATCAAGCTAAGAGT
species | Arabidopsis thaliana |
transcript | AT5G03160.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTCAGAAGCTTATTTTAAGCGTGCCTCTGTGCTTCGTCATTTTTGCAG ATACGAAGACTCTGAGAATAGTTAEST: gi|124890254|gb|EH969156.1|EH969156
genomic: CTTTCAGAAGCTTATTTTAAGCGTGCCTCTGTGCTTCGTCATTTTTGCAGgtataggaat ... tgttatatagATACGAAGACTCTGAGAATAGTTA
EST: CTGTGCTTCGTCATTTTTGCAG ATACGAAGACTCTGAGAATAGTTACCAGAAATATCTGGAATTCAAATCAGG
genomic: CTGTGCTTCGTCATTTTTGCAGgtataggaat ... tgttatatagATACGAAGACTCTGAGAATAGTTACCAGAAATATCTGGAATTCAAATCAGG
ttataaggcgttaagccagaagttgatttctcttctatttctctgtgttatatagATACGAAGACTCTGAGAATAGTTACCAGAAATATCTGGAATTCAAATCAGGAGATTCGAATGCTGAGAAAGAACTCTCTCAGCTTCATCAAGCTAAGAGT
agttgat putative branch site (score: 5)
tttctcttctatttct CT-rich tract
tgttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataggaatgagctaaaggtcctgtcggtttgcatttttattcttataaggcgttaagccagaagttgatttctcttctatttctctgtgttatatagATACGAAGACTCTGAGAATAGTTACCAGAAATATCTGGAATTCAAATCAGGAGATTCGAATGCTGAGAAAGAACTCTCTCAGCTTCATCAAGCTAAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT